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legacy: improve script/setup
I believe the files were not cleared properly and switching between emulator and firmware builds may have been troublesome. Two changes: 1. `git clean` cleans only in the working tree and subdirectories. We need to clear the related projects as well. 2. `vendor/QR-Code-generator/c/qrcodegen.{o,d}` are not git ignored and since we use the `X` flag they are not removed. Changing to `x`, which also removes untracked files.
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@ -9,5 +9,5 @@ cd "$(dirname "$0")/.."
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script/bootstrap
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git clean -fdX
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git submodule foreach git clean -fdX
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git clean -fdX . ../crypto ../common ../storage
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git submodule foreach git clean -fdx
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